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Closing the cycles

The Nutrient Cycle

Terra Humana editorial teamLast updated: 2026-10-149 min read

Floor of a Mediterranean forest garden: leaves, freshly cut branches and decaying wood on dark crumbly soil, fungal threads and an earthworm

In brief

The path of nitrogen, phosphorus and other nutrients from air and rock through plants, animals and soil life back to the roots.

How nutrients circulate in nature

A forest is never fertilised, and yet it grows for centuries. The reason is a cycle that loses very little. Nutrients enter it from two sources. Nitrogen comes from the air, where it is abundant but useless to plants until bacteria turn it into ammonium, many of them living in the root nodules of legumes and other nitrogen fixers. Phosphorus, potassium, calcium, magnesium and the trace elements come from rock, released grain by grain as it weathers.

Roots take these nutrients up, helped by mycorrhizal fungi whose threads reach into pores far too fine for any root and trade phosphorus and water for sugar. The plant builds them into leaves, wood, fruit and seed. Then they fall: leaves to the ground, fruit to animals, whose dung and eventually bodies land on the soil as well. There the soil food web takes over. Bacteria, fungi, mites, springtails and earthworms break everything down and release the nutrients again in a form roots can use. What is not taken up at once is held in humus, which binds nutrients and gives them back slowly over years.

How tight this loop is became visible in a famous experiment at Hubbard Brook in the north-eastern United States. Researchers measured what the streams carried out of forested catchments and found only small losses. When one catchment was cleared and kept free of regrowth, the loss of nitrate in its stream rose sharply. Without living roots to catch them, the nutrients that the forest had cycled for decades simply washed away.

The nutrient cycle

Tap a station to see the techniques that close the cycle there.

Give back what you take
Air and rockRootsand fungiGrowingplantsHarvestand litterAnimalsand peopleSoil lifeHumus store

Where the cycle breaks in ordinary land use

The usual way of farming has turned this loop into a one-way street at almost every station.

The harvest leaves. Every load of grain, fruit or hay carries nitrogen, phosphorus and potassium off the field. In a forest these would return as litter. On the farm they travel to cities and rarely come back. Crop residues are often burned or removed, and with them the organic matter that would have fed the soil.

Excreta go to the sewer. Most of what the harvest carried away passes through people and ends up in wastewater. In the Swedish reference values of a guideline by the Stockholm Environment Institute, urine alone holds about 88 percent of the nitrogen and two thirds of the phosphorus that a person excretes. In the sewer these nutrients become a pollution problem instead of a fertiliser.

Rain washes them out. Bare soil in winter is the classic leak. Nitrate dissolves in water and is carried below the roots into groundwater and streams. A global meta-analysis by Nouri and colleagues found that cover crops reduced nitrate leaching by 69 percent compared with bare fallow.

Erosion carries them off. The topsoil that runs off a bare slope is the richest layer, full of humus and nutrients. Italy has the highest mean rate of soil loss by water among EU member states, according to the European Commission's harmonised model.

The gap is filled from outside. Synthetic nitrogen from the Haber-Bosch process has made modern harvests possible; Erisman and colleagues estimated in 2008 that nearly half of the world's population was fed thanks to it. But the efficiency is low: by an analysis of fifty years of data from 124 countries, more than half of the nitrogen added to cropland never reaches the harvest, and most of the rest is lost to the environment. Phosphorus comes from rock deposits that are finite and concentrated in a few countries. The updated planetary boundaries of 2023 count the flows of nitrogen and phosphorus among the limits humanity has already overstepped.

Techniques that close the nutrient cycle

All of them follow one rule: give back what you take, and keep the soil alive and covered so that it can hold what it gets. The graphic above shows where each technique works.

Air and rock. Nitrogen-fixing plants bring nitrogen from the air into the system, through the rhizobia in their root nodules. When they are cut or shed leaves, the nitrogen reaches their neighbours. A dynamic accumulator draws minerals up from the subsoil with deep roots and lays them on the surface with its leaves.

Roots and fungi. Mycorrhiza extends the reach of roots and is especially important for phosphorus, which moves very little in soil. Polyculture and the plant guild combine plants with different root depths and needs, so that more of the soil is used and less is lost.

Growing plants. Biomass plants are grown to be pruned again and again; their cuttings are fertiliser grown on the spot. Green manure does the same in a season. Syntropic agriculture, the food forest and agroforestry build whole systems in which pruning and leaf fall feed the soil continuously.

Harvest and litter. Mulch and living mulch return organic matter to the surface, where soil life can work it in. Sheet mulching builds soil from layers of organic material, and hügelkultur turns rotting wood into a slow source of nutrients.

Animals and people. In silvopasture animals graze among trees and leave their dung where the nutrients came from. The zaï pit concentrates manure or compost exactly where a plant will grow. Composting kitchen waste and using urine as fertiliser close the loop at the house.

Soil life. The soil food web is the engine of the cycle: without it nothing is returned. A cover crop feeds it all year and catches nitrate in winter before rain can carry it away.

Humus store. Humus holds nutrients and releases them slowly. Biochar adds a stable, porous carbon that can hold nutrients and give soil life a home. Terra preta, the dark soil of the Amazon, shows what can grow when settlements return their waste, ash and charcoal to the land over centuries. Good soil structure keeps all of it in place.

How it looks at Sa Medada

Sa Medada is a slope in Jerzu, in Ogliastra on the east side of Sardinia, with an old olive grove and macchia on the steeper slopes. A laboratory analysis of the soil does not exist yet. We therefore cannot say which nutrients are scarce or plentiful there, and we make no claims about it. That would be the first step before any targeted fertilising, read together with simple field tests and indicator plants.

What we can say is how the cycle is meant to be started. Project Eden begins with pioneer plants and ground cover, so that the soil is never bare and what falls stays on the land. Several nitrogen fixers are already in the ground, all without inoculation with root-nodule bacteria: Tephrosia, coral tree, Inga edulis, Pacay, Bambara groundnut, fava bean and Leucaena. Whether each species finds its bacteria without help is one of the open questions. Leucaena is regarded as invasive in many tropical countries. For Terra Humana, invasive species are nature's own solution strategy and hold the greatest potential for rapid renaturation; species on the EU list of invasive alien species of Union concern are never used.

The nitrogen fixers have work to do. In the open ground grow, among others, bananas, mango, avocado, guava, cherimoya, papaya, passion fruit, lychee, moringa, persimmon and citrus. Many of them are hungry plants. Whether their demand can be met from within the land, through nitrogen fixers, ground cover and the return of everything that grows there, is the question the nutrient cycle at Sa Medada has to answer.

Plants in this entry

Frequently asked

What is the nutrient cycle?

It is the path that the elements of plant food take through a landscape. Nitrogen comes from the air, phosphorus, potassium, calcium and magnesium from weathering rock. Plants take them up, animals eat the plants, and leaves, dung and dead bodies fall back to the ground. There the soil food web breaks everything down and returns the nutrients in a form roots can use again, part of it stored for years in humus. In an intact ecosystem most nutrients go round this loop many times before any leave it.

Where does farmed land lose its nutrients?

At four main points. The harvest carries nutrients off the field, and in conventional farming little of it comes back. Bare soil lets winter rain wash nitrate below the roots; a global meta-analysis found that cover crops reduced this leaching by 69 percent compared with fallow ground. Erosion carries away the topsoil, which is the richest layer. And the nutrients in human excreta mostly end up in the sewer instead of on the land. Mineral fertiliser fills the gap, but by a widely cited analysis more than half of the nitrogen added to cropland never reaches the harvest.

Can plants really fertilise the soil?

Some can supply nitrogen. Legumes and a number of other plants live with bacteria in root nodules that turn nitrogen from the air into a form plants can use. When their leaves, roots or cuttings decay, that nitrogen enters the soil and feeds the neighbours. Phosphorus and potassium cannot be made from air. Here plants help in other ways: deep roots bring minerals up from the subsoil, and mycorrhizal fungi extend the reach of roots into soil pores they could not enter themselves.

Why does phosphorus matter so much?

Because there is no substitute for it and no air to fix it from. Every cell needs phosphorus, and the phosphorus in farm fertiliser comes from rock deposits that are finite and concentrated in a few countries. Once it washes into rivers and lakes it feeds algal blooms instead of crops. Keeping phosphorus in the soil, through cover, humus and the return of organic residues, is therefore one of the most important tasks of any land that wants to stay fertile on its own.

What can I do on a small plot to close the nutrient cycle?

Keep everything that grows on the land on the land. Leave prunings and cut green plants as mulch, grow nitrogen-fixing plants among the crops, keep the soil covered over winter so rain cannot wash nutrients away, and return kitchen scraps and garden waste as compost. Avoid burning or carrying away residues. Before adding any fertiliser, find out what the soil actually lacks: indicator plants give a first hint, a laboratory analysis gives figures.

A Eurasian jay holds an acorn on a holm oak branch, with maquis behind it in autumn lightNext in this themeThe Seed CycleThe path from flower and pollination through ripe seed, dispersal and the soil seed bank to a young plant that flowers again, a little better adapted.

Related terms

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See this in practice

Permaculture principles at work here

The design principles after David Holmgren that this page puts into practice.

Sources

  • Likens, Bormann, Johnson, Fisher and Pierce, Effects of forest cutting and herbicide treatment on nutrient budgets in the Hubbard Brook watershed-ecosystem, Ecological Monographs 40(1), pp. 23-47 (1970)
  • Lassaletta, Billen, Grizzetti, Anglade and Garnier, 50 year trends in nitrogen use efficiency of world cropping systems: the relationship between yield and nitrogen input to cropland, Environmental Research Letters 9, 105011 (2014)
  • Erisman, Sutton, Galloway, Klimont and Winiwarter, How a century of ammonia synthesis changed the world, Nature Geoscience 1, pp. 636-639 (2008)
  • Nouri, Lukas, Singh, Singh and Machado, When do cover crops reduce nitrate leaching? A global meta-analysis, Global Change Biology 28(15), pp. 4736-4749 (2022)
  • Jönsson, Richert Stintzing, Vinnerås and Salomon, Guidelines on the Use of Urine and Faeces in Crop Production, EcoSanRes Publications Series 2004-2, Stockholm Environment Institute, p. 7 (2004)
  • Cordell, Drangert and White, The story of phosphorus: Global food security and food for thought, Global Environmental Change 19(2), pp. 292-305 (2009)
  • Richardson et al., Earth beyond six of nine planetary boundaries, Science Advances 9(37), eadh2458 (2023)
  • Herridge, Peoples and Boddey, Global inputs of biological nitrogen fixation in agricultural systems, Plant and Soil 311, pp. 1-18 (2008)
  • Smith and Read, Mycorrhizal Symbiosis, 3rd edition, Academic Press (2008)
  • Panagos et al., The new assessment of soil loss by water erosion in Europe, Environmental Science & Policy 54, pp. 438-447 (2015)
  • Bill Mollison, Permaculture: A Designers' Manual, Tagari Publications (1988)

Last updated: 2026-10-14